Mass Spec

Flow Cytometry

IHC

Sample requirement

1–2 mg

20 mg

<1 mg

1–2 mg

Sample cost (excluding primary antibody)

$25–50 / sample

High instrumentation or capital equipment fee

$60 / sample

$30–50 / sample

Output

Semi-quantitative

Quantitative / Qualitative

Quantitative

Semi-quantitative

Time-to-data

Same day

Days to weeks

1–3 days

Same day

High throughput screening

Medium

Low

Medium – High

High

Automation

Easy

Hard

Moderate

Easy

Spatial insights on protein glycosylation

Yes

No

No

No

Features

  • Spatial visualization of glycan-protein interactions
  • High-throughput and same-day turnaround time
  • Limited multiplexing – detect one target glycan and one target protein simultaneously
  • High sensitivity for identifying proteins and post-translational modifications
  • Absolute quantification using selected workflow
  • High cost and expertise barrier due to instrumentation and data processing
  • Lack of spatial context
  • Multiplexing: detect numerous glycans and proteins in liquid samples
  • Minimal sample needed per experiment (ideal for precious sample)
  • Data interpretation requires expertise
  • Lack of spatial organization
  • Multiplex profiling of proteins or glycans in cells and tissues
  • Scalable and easy to automate
  • Unable to probe glycan-protein interactions

Mass Spec

Flow Cytometry

IHC

Sample requirement

1–2 mg

20 mg

<1 mg

1–2 mg

Sample cost (excluding primary antibody)

$25–50 / sample

High instrumentation or capital equipment fee

$60 / sample

$30–50 / sample

Output

Semi-Quantitative

Quantitative / Qualitative

Quantitative

Semi-Quantitative

Time-to-data

Same day

Days to weeks

1–3 days

Same day

High throughput screening

Medium

Low

Medium – High

High

Automation

Easy

Hard

Moderate

Easy

Spatial insights on protein glycosylation

Yes

No

No

No

Features

  • ✓ Spatial visualization of glycan-protein interactions
  • ✓ High-throughput and same-day turnaround time
  • ✗ Limited multiplexing – detect one target glycan and one target protein simultaneously
  • ✓ High sensitivity for identifying proteins and post-translational modifications
  • ✓ Absolute quantification using selected workflow
  • ✗ High cost and expertise barrier due to instrumentation and data processing
  • ✗ Lack of spatial context
  • ✓ Multiplexing: detect numerous glycans and proteins in liquid samples
  • ✓ Minimal sample needed per experiment (ideal for precious sample)
  • ✗ Data interpretation requires expertise
  • ✗ Lack of spatial organization
  • ✓ Multiplex profiling of proteins or glycans in cells and tissues
  • ✓ Scalable and easy to automate
  • ✗ Unable to probe glycan-protein interactions